[5]ML-Logistic Regression_Programming ex2
Task #1 Logistic regression
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ex2.m
%% Machine Learning Online Class - Exercise 2: Logistic Regression
%
% Instructions
% ------------
%
% This file contains code that helps you get started on the logistic
% regression exercise. You will need to complete the following functions
% in this exericse:
%
% sigmoid.m
% costFunction.m
% predict.m
% costFunctionReg.m
%
% For this exercise, you will not need to change any code in this file,
% or any other files other than those mentioned above.
%
%% Initialization
clear ; close all; clc
%% Load Data
% The first two columns contains the exam scores and the third column
% contains the label.
data = load('ex2data1.txt');
X = data(:, [1, 2]); y = data(:, 3);
%% ==================== Part 1: Plotting ====================
% We start the exercise by first plotting the data to understand the
% the problem we are working with.
fprintf(['Plotting data with + indicating (y = 1) examples and o ' ...
'indicating (y = 0) examples.\n']);
plotData(X, y);
% Put some labels
hold on;
% Labels and Legend
xlabel('Exam 1 score')
ylabel('Exam 2 score')
% Specified in plot order
legend('Admitted', 'Not admitted')
hold off;
fprintf('\nProgram paused. Press enter to continue.\n');
pause;
%% ============ Part 2: Compute Cost and Gradient ============
% In this part of the exercise, you will implement the cost and gradient
% for logistic regression. You neeed to complete the code in
% costFunction.m
% Setup the data matrix appropriately, and add ones for the intercept term
[m, n] = size(X);
% Add intercept term to x and X_test
X = [ones(m, 1) X];
% Initialize fitting parameters
initial_theta = zeros(n + 1, 1);
% Compute and display initial cost and gradient
[cost, grad] = costFunction(initial_theta, X, y);
fprintf('Cost at initial theta (zeros): %f\n', cost);
fprintf('Expected cost (approx): 0.693\n');
fprintf('Gradient at initial theta (zeros): \n');
fprintf(' %f \n', grad);
fprintf('Expected gradients (approx):\n -0.1000\n -12.0092\n -11.2628\n');
% Compute and display cost and gradient with non-zero theta
test_theta = [-24; 0.2; 0.2];
[cost, grad] = costFunction(test_theta, X, y);
fprintf('\nCost at test theta: %f\n', cost);
fprintf('Expected cost (approx): 0.218\n');
fprintf('Gradient at test theta: \n');
fprintf(' %f \n', grad);
fprintf('Expected gradients (approx):\n 0.043\n 2.566\n 2.647\n');
fprintf('\nProgram paused. Press enter to continue.\n');
pause;
%% ============= Part 3: Optimizing using fminunc =============
% In this exercise, you will use a built-in function (fminunc) to find the
% optimal parameters theta.
% Set options for fminunc
options = optimset('GradObj', 'on', 'MaxIter', 400);
% Run fminunc to obtain the optimal theta
% This function will return theta and the cost
[theta, cost] = ...
fminunc(@(t)(costFunction(t, X, y)), initial_theta, options);
% Print theta to screen
fprintf('Cost at theta found by fminunc: %f\n', cost);
fprintf('Expected cost (approx): 0.203\n');
fprintf('theta: \n');
fprintf(' %f \n', theta);
fprintf('Expected theta (approx):\n');
fprintf(' -25.161\n 0.206\n 0.201\n');
% Plot Boundary
plotDecisionBoundary(theta, X, y);
% Put some labels
hold on;
% Labels and Legend
xlabel('Exam 1 score')
ylabel('Exam 2 score')
% Specified in plot order
legend('Admitted', 'Not admitted')
hold off;
fprintf('\nProgram paused. Press enter to continue.\n');
pause;
%% ============== Part 4: Predict and Accuracies ==============
% After learning the parameters, you'll like to use it to predict the outcomes
% on unseen data. In this part, you will use the logistic regression model
% to predict the probability that a student with score 45 on exam 1 and
% score 85 on exam 2 will be admitted.
%
% Furthermore, you will compute the training and test set accuracies of
% our model.
%
% Your task is to complete the code in predict.m
% Predict probability for a student with score 45 on exam 1
% and score 85 on exam 2
prob = sigmoid([1 45 85] * theta);
fprintf(['For a student with scores 45 and 85, we predict an admission ' ...
'probability of %f\n'], prob);
fprintf('Expected value: 0.775 +/- 0.002\n\n');
% Compute accuracy on our training set
p = predict(theta, X);
fprintf('Train Accuracy: %f\n', mean(double(p == y)) * 100);
fprintf('Expected accuracy (approx): 89.0\n');
fprintf('\n');
% Compute accuracy on our training set
p = predict(theta, X);
fprintf('Train Accuracy: %f\n', mean(double(p == y)) * 100);
‘p’ : predict value
‘y’ : real value
double(py) : 两者逐一对比，相同置1，不同置0，mean计算均值；【double(p~=y) 向量p与真实值向量y逐一对比，相同则置为0，不同则置为1。与上述对比正好相反。】
plotData.m
function plotData(X, y)
%PLOTDATA Plots the data points X and y into a new figure
% PLOTDATA(x,y) plots the data points with + for the positive examples
% and o for the negative examples. X is assumed to be a Mx2 matrix.
% ====================== YOUR CODE HERE ======================
% Instructions: Plot the positive and negative examples on a
% 2D plot, using the option 'k+' for the positive
% examples and 'ko' for the negative examples.
%
% Create New Figure
% Find Indices of Positive and Negative Examples
pos = find(y==1); neg = find(y == 0);
% Plot Examples
plot(X(pos, 1), X(pos, 2), 'k+','LineWidth',2, 'MarkerSize', 7);
hold on;
plot(X(neg, 1), X(neg, 2), 'ko', 'MarkerFaceColor', 'y','MarkerSize', 7);
hold on;
% =========================================================================
hold off;
end
pos = find(y==1)
find函数用来索引，找到 y=1 的index，可在数组中使用
costFunction.m
function [J, grad] = costFunction(theta, X, y)
%COSTFUNCTION Compute cost and gradient for logistic regression
% J = COSTFUNCTION(theta, X, y) computes the cost of using theta as the
% parameter for logistic regression and the gradient of the cost
% w.r.t. to the parameters.
% Initialize some useful values
m = length(y); % number of training examples
% You need to return the following variables correctly
J = 0;
grad = zeros(size(theta));
% ====================== YOUR CODE HERE ======================
% Instructions: Compute the cost of a particular choice of theta.
% You should set J to the cost.
% Compute the partial derivatives and set grad to the partial
% derivatives of the cost w.r.t. each parameter in theta
%
% Note: grad should have the same dimensions as theta
%
h = sigmoid(X*theta);
J = sum((-y)'*log(h)-(1-y)'*log(1-h))/m
grad = (h-y)'*X/m
% =============================================================
end
sigmoid.m
function g = sigmoid(z)
%SIGMOID Compute sigmoid function
% g = SIGMOID(z) computes the sigmoid of z.
% You need to return the following variables correctly
g = zeros(size(z));
% ====================== YOUR CODE HERE ======================
% Instructions: Compute the sigmoid of each value of z (z can be a matrix,
% vector or scalar).
g = 1./(1+exp(-z)); % "./" because z is a matrix
% =============================================================
end
predict.m
function p = predict(theta, X)
%PREDICT Predict whether the label is 0 or 1 using learned logistic
%regression parameters theta
% p = PREDICT(theta, X) computes the predictions for X using a
% threshold at 0.5 (i.e., if sigmoid(theta'*x) >= 0.5, predict 1)
m = size(X, 1); % Number of training examples
% You need to return the following variables correctly
p = zeros(m, 1);
% ====================== YOUR CODE HERE ======================
% Instructions: Complete the following code to make predictions using
% your learned logistic regression parameters.
% You should set p to a vector of 0's and 1's
%
v=sigmoid(X*theta);
for i = 1:m
if v(i,1)>=0.5
p(i,1) = 1;
else p(i,1) = 0;
end
end
% =========================================================================
end
mapFeature.m
function out = mapFeature(X1, X2)
% MAPFEATURE Feature mapping function to polynomial features
%
% MAPFEATURE(X1, X2) maps the two input features
% to quadratic features used in the regularization exercise.
%
% Returns a new feature array with more features, comprising of
% X1, X2, X1.^2, X2.^2, X1*X2, X1*X2.^2, etc..
%
% Inputs X1, X2 must be the same size
%
degree = 6;
out = ones(size(X1(:,1)));
for i = 1:degree
for j = 0:i
out(:, end+1) = (X1.^(i-j)).*(X2.^j);
end
end
end
plotDescisionBoundary.m
function plotDecisionBoundary(theta, X, y)
%PLOTDECISIONBOUNDARY Plots the data points X and y into a new figure with
%the decision boundary defined by theta
% PLOTDECISIONBOUNDARY(theta, X,y) plots the data points with + for the
% positive examples and o for the negative examples. X is assumed to be
% a either
% 1) Mx3 matrix, where the first column is an all-ones column for the
% intercept.
% 2) MxN, N>3 matrix, where the first column is all-ones
% Plot Data
plotData(X(:,2:3), y);
hold on
if size(X, 2) <= 3
% Only need 2 points to define a line, so choose two endpoints
plot_x = [min(X(:,2))-2, max(X(:,2))+2];
% Calculate the decision boundary line
plot_y = (-1./theta(3)).*(theta(2).*plot_x + theta(1));
% Plot, and adjust axes for better viewing
plot(plot_x, plot_y)
% Legend, specific for the exercise
legend('Admitted', 'Not admitted', 'Decision Boundary')
axis([30, 100, 30, 100])
else
% Here is the grid range
u = linspace(-1, 1.5, 50);
v = linspace(-1, 1.5, 50);
z = zeros(length(u), length(v));
% Evaluate z = theta*x over the grid
for i = 1:length(u)
for j = 1:length(v)
z(i,j) = mapFeature(u(i), v(j))*theta;
end
end
z = z'; % important to transpose z before calling contour
% Plot z = 0
% Notice you need to specify the range [0, 0]
contour(u, v, z, [0, 0], 'LineWidth', 2)
end
hold off
end
Task #2 Regularized logistic regression
ex1_reg.m
%% Machine Learning Online Class - Exercise 2: Logistic Regression
%
% Instructions
% ------------
%
% This file contains code that helps you get started on the second part
% of the exercise which covers regularization with logistic regression.
%
% You will need to complete the following functions in this exericse:
%
% sigmoid.m
% costFunction.m
% predict.m
% costFunctionReg.m
%
% For this exercise, you will not need to change any code in this file,
% or any other files other than those mentioned above.
%
%% Initialization
clear ; close all; clc
%% Load Data
% The first two columns contains the X values and the third column
% contains the label (y).
data = load('ex2data2.txt');
X = data(:, [1, 2]); y = data(:, 3);
plotData(X, y);
% Put some labels
hold on;
% Labels and Legend
xlabel('Microchip Test 1')
ylabel('Microchip Test 2')
% Specified in plot order
legend('y = 1', 'y = 0')
hold off;
%% =========== Part 1: Regularized Logistic Regression ============
% In this part, you are given a dataset with data points that are not
% linearly separable. However, you would still like to use logistic
% regression to classify the data points.
%
% To do so, you introduce more features to use -- in particular, you add
% polynomial features to our data matrix (similar to polynomial
% regression).
%
% Add Polynomial Features
% Note that mapFeature also adds a column of ones for us, so the intercept
% term is handled
X = mapFeature(X(:,1), X(:,2));
% Initialize fitting parameters
initial_theta = zeros(size(X, 2), 1);
% Set regularization parameter lambda to 1
lambda = 1;
% Compute and display initial cost and gradient for regularized logistic
% regression
[cost, grad] = costFunctionReg(initial_theta, X, y, lambda);
fprintf('Cost at initial theta (zeros): %f\n', cost);
fprintf('Expected cost (approx): 0.693\n');
fprintf('Gradient at initial theta (zeros) - first five values only:\n');
fprintf(' %f \n', grad(1:5));
fprintf('Expected gradients (approx) - first five values only:\n');
fprintf(' 0.0085\n 0.0188\n 0.0001\n 0.0503\n 0.0115\n');
fprintf('\nProgram paused. Press enter to continue.\n');
pause;
% Compute and display cost and gradient
% with all-ones theta and lambda = 10
test_theta = ones(size(X,2),1);
[cost, grad] = costFunctionReg(test_theta, X, y, 10);
fprintf('\nCost at test theta (with lambda = 10): %f\n', cost);
fprintf('Expected cost (approx): 3.16\n');
fprintf('Gradient at test theta - first five values only:\n');
fprintf(' %f \n', grad(1:5));
fprintf('Expected gradients (approx) - first five values only:\n');
fprintf(' 0.3460\n 0.1614\n 0.1948\n 0.2269\n 0.0922\n');
fprintf('\nProgram paused. Press enter to continue.\n');
pause;
%% ============= Part 2: Regularization and Accuracies =============
% Optional Exercise:
% In this part, you will get to try different values of lambda and
% see how regularization affects the decision coundart
%
% Try the following values of lambda (0, 1, 10, 100).
%
% How does the decision boundary change when you vary lambda? How does
% the training set accuracy vary?
%
% Initialize fitting parameters
initial_theta = zeros(size(X, 2), 1);
% Set regularization parameter lambda to 1 (you should vary this)
lambda = 10;
% Set Options
options = optimset('GradObj', 'on', 'MaxIter', 400);
% Optimize
[theta, J, exit_flag] = ...
fminunc(@(t)(costFunctionReg(t, X, y, lambda)), initial_theta, options);
% Plot Boundary
plotDecisionBoundary(theta, X, y);
hold on;
title(sprintf('lambda = %g', lambda))
% Labels and Legend
xlabel('Microchip Test 1')
ylabel('Microchip Test 2')
legend('y = 1', 'y = 0', 'Decision boundary')
hold off;
% Compute accuracy on our training set
p = predict(theta, X);
fprintf('Train Accuracy: %f\n', mean(double(p == y)) * 100);
fprintf('Expected accuracy (with lambda = 1): 83.1 (approx)\n');
costFunctionReg.m
function [J, grad] = costFunctionReg(theta, X, y, lambda)
%COSTFUNCTIONREG Compute cost and gradient for logistic regression with regularization
% J = COSTFUNCTIONREG(theta, X, y, lambda) computes the cost of using
% theta as the parameter for regularized logistic regression and the
% gradient of the cost w.r.t. to the parameters.
% Initialize some useful values
m = length(y); % number of training examples
% You need to return the following variables correctly
J = 0;
grad = zeros(size(theta));
% ====================== YOUR CODE HERE ======================
% Instructions: Compute the cost of a particular choice of theta.
% You should set J to the cost.
% Compute the partial derivatives and set grad to the partial
% derivatives of the cost w.r.t. each parameter in theta
h=sigmoid(X*theta);
theta(1,1)=0;
J=sum((-y)'*log(h)-(1-y)'*log(1-h))/m+lambda/2/m*sum(power(theta,2));%power(theta,2)-->"theta^2"
grad=((h-y)'*X)/m+lambda/m*theta';
% =============================================================
end
Review
- double(py) : compare p with y one by one，set 1 if same，set 0 if different，mean() will return mean；[double(p~=y) set 0 if same，set 1 if different]
-
m = find(y1) can find index of y=1, and the corresponding value in matrix M is M(m, 1)
-
Please remember ‘.*’ and ‘,^’ in MATLAB.
-
The decision boundary will be changed as we vary λ :
Fitting
fitting
Underfitting
Overfitting
